lumi

BeadArray Specific Methods for Illumina Microarrays

The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level.

Author	Pan Du, Warren Kibbe, Simon Lin
Maintainer	Pan Du

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("lumi")

Vignettes (Documentation)

Package Downloads

Bioc2007_lumi_presentation.pdf

IlluminaAnnotation.pdf

lumi.pdf

lumi_VST_evaluation.pdf

Source	lumi_1.6.3.tar.gz
Windows binary	lumi_1.6.3.zip
OS X binary	lumi_1.6.3.tgz

Details

biocViews	Microarray , OneChannel , Preprocessing
Depends	R, affy, mgcv, methods
Suggests	Biobase, annotate, beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db, genefilter, geneplotter, RColorBrewer
Imports
SystemRequirements
License	LGPL version 2 or newer
URL
dependsOnMe
suggestsMe	beadarray