limma

Linear Models for Microarray Data

Data analysis, linear models and differential expression for microarray data.

Author Gordon Smyth with contributions from Matthew Ritchie, Jeremy Silver, James Wettenhall, Natalie Thorne, Mette Langaas, Egil Ferkingstad, Marcus Davy, Francois Pepin and Dongseok Choi.
Maintainer Gordon Smyth

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("limma")

Vignettes (Documentation)

Package Downloads
limma.pdf
usersguide.pdf
Source limma_2.14.7.tar.gz
Windows binary limma_2.14.7.zip
OS X binary limma_2.14.7.tgz

Details

biocViews
Microarray , OneChannel , TwoChannel , DataImport , QualityControl , Preprocessing , Statistics , DifferentialExpression , MultipleComparisons , TimeCourse
Depends R, methods
Suggests affy, marray, MASS, splines, sma, statmod, vsn
Imports
SystemRequirements
License LGPL
URL http://bioinf.wehi.edu.au/limma
dependsOnMe AffyExpress, CALIB, RMAGEML, Ringo, affycoretools, affylmGUI, arrayQuality, beadarray, codelink, convert, limmaGUI, maDB, maigesPack, marray, puma, snapCGH, timecourse, vsn
suggestsMe ABarray, BiocCaseStudies, GEOquery, GeneSelector, OLIN, beadarraySNP, lumi, maSigPro, plw