annotate

Annotation for microarrays

Using R enviroments for annotation.

Author R. Gentleman
Maintainer Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("annotate")

Vignettes (Documentation)

Package Downloads
GOusage.pdf
annotate.pdf
chromLoc.pdf
prettyOutput.pdf
query.pdf
useDataPkgs.pdf
useHomology.pdf
useProbeInfo.pdf
Source annotate_1.18.0.tar.gz
Windows binary annotate_1.18.0.zip
OS X binary annotate_1.18.0.tgz

Details

biocViews
Annotation , Pathways , GO , Affymetrix
Depends R, methods, Biobase, AnnotationDbi, xtable
Suggests hgu95av2.db, genefilter, Biostrings, rae230a.db, rae230aprobe, tkWidgets, XML, hsahomology, xlahomology, GO.db, org.Hs.eg.db
Imports methods, AnnotationDbi
SystemRequirements
License Artistic-2.0
URL
dependsOnMe AnnBuilder, Category, GOstats, GSEABase, MLInterfaces, SemSim, affycoretools, codelink, geneplotter, globaltest, goTools, idiogram, macat, ontoTools, puma, safe, splicegear
suggestsMe BiocCaseStudies, GSEAlm, biomaRt, geneplotter, lumi, maigesPack, oneChannelGUI, siggenes