CGHcall

Calling aberrations for array CGH tumor profiles.

Calls aberrations for array CGH data using a six state mixture model as well as several biological concepts that are ignored by existing algorithms. Visualization of profiles is also provided.

Author	Sjoerd Vosse and Mark van de Wiel
Maintainer	Sjoerd Vosse

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CGHcall")

Vignettes (Documentation)

Package Downloads

CGHcall.pdf

Source	CGHcall_1.2.0.tar.gz
Windows binary	CGHcall_1.2.0.zip
OS X binary	CGHcall_1.2.0.tgz

Details

biocViews	Microarray , DNACopyNumber , Preprocessing , Visualization
Depends	R, impute, DNAcopy, methods, Biobase
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Imports
SystemRequirements
License	GPL (http://www.gnu.org/copyleft/gpl.html)
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