ABarray

Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Micorarray (AB1700) gene expression data.

Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.

Author Yongming Andrew Sun
Maintainer Yongming Andrew Sun

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ABarray")

Vignettes (Documentation)

Package Downloads

ABarray.pdf
ABarrayGUI.pdf
Source ABarray_1.8.0.tar.gz
Windows binary ABarray_1.8.0.zip
OS X binary ABarray_1.8.0.tgz

Details

biocViews
Depends Biobase, multtest, tcltk
Suggests limma, LPE
Imports
SystemRequirements
License GPL
URL
dependsOnMe
suggestsMe