To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")

In most cases, you don't need to download the package archive at all.

siggenes

This package is for version 2.14 of Bioconductor; for the stable, up-to-date release version, see siggenes.

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: 2.14

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

Citation (from within R, enter citation("siggenes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("siggenes")

PDF	R Script	siggenes Manual
HTML		R: EBAM specific plot method
HTML		R: EBAM specific print method
HTML		R: EBAM specific summary method
HTML		R: FindA0 specific plot method
HTML		R: FindA0 specific print method
HTML		R: SAM specific identify method
HTML		R: SAM specific plot method
HTML		R: SAM specific print method
HTML		R: SAM specific summary method
PDF		Reference Manual

Details

biocViews	DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software
Version	1.38.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 11 years)
License	LGPL (>= 2)
Depends	methods, Biobase, multtest, splines, graphics
Imports	stats4
LinkingTo
Suggests	affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
SystemRequirements
Enhances
URL
Depends On Me	KCsmart, oneChannelGUI
Imports Me	charm, DeSousa2013, GeneSelector, minfi
Suggests Me	GeneSelector, logicFS, trio, XDE
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	siggenes_1.38.0.tar.gz
Windows Binary	siggenes_1.38.0.zip
Mac OS X 10.6 (Snow Leopard)	siggenes_1.38.0.tgz
Mac OS X 10.9 (Mavericks)	siggenes_1.38.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/siggenes/tree/release-2.14
Package Short Url	http://bioconductor.org/packages/siggenes/
Package Downloads Report	Download Stats

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