To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("QDNAseq")

In most cases, you don't need to download the package archive at all.

QDNAseq

This package is for version 2.14 of Bioconductor; for the stable, up-to-date release version, see QDNAseq.

Quantitative DNA sequencing for chromosomal aberrations

Bioconductor version: 2.14

Quantitative DNA sequencing for chromosomal aberrations.

Author: Ilari Scheinin

Maintainer: Ilari Scheinin <ilari.scheinin at gmail.com>

Citation (from within R, enter citation("QDNAseq")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("QDNAseq")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QDNAseq")

biocViews	CopyNumberVariation, DNASeq, Genetics, GenomeAnnotation, Preprocessing, QualityControl, Sequencing, Software
Version	1.0.5
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	GPL
Depends	R (>= 2.15.0)
Imports	graphics, methods, stats, utils, matrixStats (>= 0.9.4), R.utils (>= 1.28.4), Biobase(>= 2.18.0), CGHbase(>= 1.18.0), CGHcall(>= 2.18.0), DNAcopy(>= 1.32.0), Rsamtools(>= 1.10.0)
LinkingTo
Suggests	R.cache (>= 0.9.0), digest, snowfall, BSgenome, GenomeInfoDb, GenomicRanges
SystemRequirements
Enhances
URL	https://github.com/ccagc/QDNAseq
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	QDNAseq_1.0.5.tar.gz
Windows Binary	QDNAseq_1.0.5.zip
Mac OS X 10.6 (Snow Leopard)	QDNAseq_1.0.5.tgz
Mac OS X 10.9 (Mavericks)	QDNAseq_1.0.5.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/QDNAseq/tree/release-2.14
Package Short Url	http://bioconductor.org/packages/QDNAseq/
Package Downloads Report	Download Stats

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