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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("COPDSexualDimorphism")
In most cases, you don't need to download the package archive at all.
COPDSexualDimorphism
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This package is for version 2.14 of Bioconductor; for the stable, up-to-date release version, see COPDSexualDimorphism.
Sexual dimorphic and COPD differential analysis for gene expression and methylation.
Bioconductor version: 2.14
Sexual dimoprhic and COPD differential (SDCD) analysis contrasts regression coefficients from two stratified analysis. Stratification can be done in two ways: by COPD status or by sex. For COPD-stratified analysis, SDCD analysis contrasts sexual dimorphism between cases and controls, while sex-stratified SDCD analsysis contrasts COPD differential expression pattern between males and females. The package is meant to be used in conjunction with the package limma.
Author: J Fah Sathirapongsasuti
Maintainer: J Fah Sathirapongsasuti <fah at cs.stanford.edu>
Citation (from within R,
enter citation("COPDSexualDimorphism")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("COPDSexualDimorphism")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("COPDSexualDimorphism")
| R Script | SDCD eQTL | |
| R Script | SDCD Genes | |
| R Script | SDCD Methylation | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | AssayDomain, DNAMethylation, DifferentialExpression, GeneExpression, Microarray, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
| License | LGPL-2.1 |
| Depends | COPDSexualDimorphism.data, NCBI2R, RColorBrewer, beeswarm, limma, GenomicRanges, gplots, gtools |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | COPDSexualDimorphism_1.0.0.tar.gz |
| Windows Binary | COPDSexualDimorphism_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | COPDSexualDimorphism_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | COPDSexualDimorphism_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/COPDSexualDimorphism/tree/release-2.14 |
| Package Short Url | http://bioconductor.org/packages/COPDSexualDimorphism/ |
| Package Downloads Report | Download Stats |
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