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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowMap")
In most cases, you don't need to download the package archive at all.
flowMap
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This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see flowMap.
A probabilistic algorithm for matching and comparing multiple flow cytometry samples
Bioconductor version: 2.13
This package provides an algorithm to compare and match cell populations across multiple flow cytometry samples. The method is based on the Friedman-Rafsky test, a nonparametric multivariate statistical test, where two cell distributions match if they occupy a similar feature space. The algorithm allows the users to specify a reference sample for comparison or to construct a reference sample from the available data. The output of the algorithm is a set of text files where the cell population labels are replaced by a metaset of population labels, generated from the matching process.
Author: Chiaowen Joyce Hsiao and Yu Qian
Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>
Citation (from within R,
enter citation("flowMap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowMap")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowMap")
| R Script | Multiple sample comparison in flow cytometry data with flowMap | |
| Reference Manual |
Details
| biocViews | FlowCytometry, MultipleComparisons, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), ggplot2 (>= 0.9.3.1), scales (>= 0.2.3), methods (>= 2.14) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
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| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | flowMap_1.0.0.tar.gz |
| Windows Binary | flowMap_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | flowMap_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/flowMap/tree/release-2.13 |
| Package Short Url | http://bioconductor.org/packages/flowMap/ |
| Package Downloads Report | Download Stats |
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