To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eisa")
In most cases, you don't need to download the package archive at all.
eisa
|
This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see eisa.
Expression data analysis via the Iterative Signature Algorithm
Bioconductor version: 2.13
The Iterative Signature Algorithm (ISA) is a biclustering method; it finds correlated blocks (transcription modules) in gene expression (or other tabular) data. The ISA is capable of finding overlapping modules and it is resilient to noise. This package provides a convenient interface to the ISA, using standard BioConductor data structures; and also contains various visualization tools that can be used with other biclustering algorithms.
Author: Gabor Csardi <csardi.gabor at gmail.com>
Maintainer: Gabor Csardi <csardi.gabor at gmail.com>
Citation (from within R,
enter citation("eisa")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("eisa")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eisa")
| ISA_internals.pdf | ||
| R Script | The eisa and the biclust packages | |
| R Script | The Iterative Signature Algorithm for Gene Expression Data | |
| tissues.pdf | ||
| Reference Manual |
Details
| biocViews | Classification, GeneExpression, Microarray, Software, Visualization |
| Version | 1.14.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (6 years) |
| License | GPL (>= 2) |
| Depends | isa2, Biobase(>= 2.17.8), AnnotationDbi, methods |
| Imports | BiocGenerics, Category, genefilter, DBI |
| LinkingTo | |
| Suggests | igraph (>= 0.6), Matrix, GOstats, GO.db, KEGG.db, biclust, MASS, xtable, ALL, hgu95av2.db, targetscan.Hs.eg.db, org.Hs.eg.db |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | ExpressionView |
| Imports Me | ExpressionView |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | eisa_1.14.0.tar.gz |
| Windows Binary | eisa_1.14.0.zip |
| Mac OS X 10.6 (Snow Leopard) | eisa_1.14.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/eisa/tree/release-2.13 |
| Package Short Url | http://bioconductor.org/packages/eisa/ |
| Package Downloads Report | Download Stats |
Documentation »
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