To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see clusterProfiler.

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.13

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

PDF	R Script	An introduction to clusterProfiler
PDF		clusterProfiler_for_unsupported_organisms.pdf
PDF		Reference Manual
Text		NEWS

biocViews	Clustering, GO, GeneSetEnrichment, MultipleComparisons, Pathways, Software, Visualization
Version	1.10.1
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	Artistic-2.0
Depends	R (>= 2.10), ggplot2
Imports	methods, stats4, DBI, plyr, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, DOSE, GOSemSim
LinkingTo
Suggests	ReactomePA, pathview, knitr
SystemRequirements
Enhances
URL	http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118
Depends On Me
Imports Me
Suggests Me	DOSE, GOSemSim, ReactomePA
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	clusterProfiler_1.10.1.tar.gz
Windows Binary	clusterProfiler_1.10.1.zip
Mac OS X 10.6 (Snow Leopard)	clusterProfiler_1.10.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-2.13
Package Short Url	http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report	Download Stats

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