To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("parathyroid")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see parathyroid.
Bioconductor version: 2.12
This package provides a CountDataSet and ExonCountSet of read counts for paired-end RNA-Seq data from experiments on primary cultures of parathyroid tumors. The data were presented in the article "Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas" by Haglund F, Ma R, Huss M, Sulaiman L, Lu M, Nilsson IL, Hoog A, Juhlin CC, Hartman J, Larsson C, J Clin Endocrinol Metab. jc.2012-2484, Epub 2012 Sep 28, PMID: 23024189. The sequencing was performed on tumor cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control). One control sample was omitted by the paper authors due to low quality. The package vignette describes the creation of objects from raw sequencing data provided by NCBI Gene Expression Omnibus under accession number GSE37211. The gene and exon features are the GRCh37 Ensembl annotations, release 66.
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
Citation (from within R,
enter citation("parathyroid")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("parathyroid")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("parathyroid")
R Script | parathyroidExons and parathyroidGenes | |
Reference Manual |
biocViews | ExperimentData, RNAseqData |
Version | 0.99.6 |
License | LGPL |
Depends | DEXSeq, DESeq, R (>= 2.10) |
Imports | |
LinkingTo | |
Suggests | GEOquery, SRAdb |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | parathyroid_0.99.6.tar.gz |
Windows Binary | parathyroid_0.99.6.zip |
Mac OS X 10.6 (Snow Leopard) | parathyroid_0.99.6.tgz |
Subversion source | (username/password: readonly) |
Package Short Url | http://bioconductor.org/packages/parathyroid/ |
Package Downloads Report | Download Stats |
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