To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

In most cases, you don't need to download the package archive at all.

RNAseqData.HNRNPC.bam.chr14

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see RNAseqData.HNRNPC.bam.chr14.

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: 2.12

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Citation (from within R, enter citation("RNAseqData.HNRNPC.bam.chr14")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

Documentation


PDF		Reference Manual

Details

biocViews	ExperimentData, Homo_sapiens, RNAseqData
Version	0.1.3
License	LGPL
Depends
Imports
LinkingTo
Suggests	Rsamtools, BiocInstaller
SystemRequirements
Enhances
URL	http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me	RNAseqData.HeLa.bam.chr14
Imports Me	RNAseqData.HeLa.bam.chr14
Suggests Me	SplicingGraphs
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RNAseqData.HNRNPC.bam.chr14_0.1.3.tar.gz
Windows Binary	RNAseqData.HNRNPC.bam.chr14_0.1.3.zip
Mac OS X 10.6 (Snow Leopard)	RNAseqData.HNRNPC.bam.chr14_0.1.3.tgz
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/RNAseqData.HNRNPC.bam.chr14/
Package Downloads Report	Download Stats

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