To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("triform")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see triform.
Bioconductor version: 2.12
The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.
Author: Karl Kornacker Developer [aut], Tony HÃ¥ndstad Developer [aut, cre]
Maintainer: Tony HÃ¥ndstad Developer <tony.handstad at gmail.com>
Citation (from within R,
enter citation("triform")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("triform")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("triform")
R Script | Triform users guide | |
Reference Manual |
biocViews | ChIPseq, Sequencing, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
License | GPL-2 |
Depends | R (>= 2.11.0), IRanges, yaml |
Imports | IRanges, yaml, BiocGenerics |
LinkingTo | |
Suggests | RUnit |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | triform_1.2.0.tar.gz |
Windows Binary | triform_1.2.0.zip |
Mac OS X 10.6 (Snow Leopard) | triform_1.2.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/triform/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/triform/ |
Package Downloads Report | Download Stats |
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