To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("safe")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see safe.
Bioconductor version: 2.12
SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.
Author: William T. Barry
Maintainer: William T. Barry <bbarry at jimmy.harvard.edu>
Citation (from within R,
enter citation("safe")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("safe")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("safe")
R Script | SAFE manual | |
Reference Manual |
biocViews | FunctionalAnnotation, GeneExpression, Software |
Version | 3.0.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
License | GPL (>= 2) |
Depends | R (>= 2.4.0), AnnotationDbi, Biobase, methods, SparseM |
Imports | |
LinkingTo | |
Suggests | GO.db, KEGG.db, PFAM.db, hgu133a.db, breastCancerUPP, survival, foreach, doRNG, Rgraphviz, GOstats |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | safe_3.0.0.tar.gz |
Windows Binary | safe_3.0.0.zip |
Mac OS X 10.6 (Snow Leopard) | safe_3.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/safe/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/safe/ |
Package Downloads Report | Download Stats |
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