To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaSeqMap")

In most cases, you don't need to download the package archive at all.

rnaSeqMap

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see rnaSeqMap.

rnaSeq secondary analyses

Bioconductor version: 2.12

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("rnaSeqMap")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("rnaSeqMap")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaSeqMap")

PDF	R Script	rnaSeqMap primer
PDF		Reference Manual

biocViews	Annotation, Bioinformatics, DifferentialExpression, GeneExpression, HighThroughputSequencing, RNAseq, ReportWriting, SAGE, Software, Transcription, Visualization
Version	2.14.0
In Bioconductor since	BioC 2.7 (R-2.12) (5.5 years)
License	GPL-2
Depends	R (>= 2.11.0), methods, xmapcore, Biobase, Rsamtools
Imports	GenomicRanges, IRanges, edgeR, DESeq, DBI, RMySQL (>= 0.6-0)
LinkingTo
Suggests
SystemRequirements
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URL
Depends On Me
Imports Me
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Build Report

Follow Installation instructions to use this package in your R session.

Package Source	rnaSeqMap_2.14.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)	rnaSeqMap_2.14.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/rnaSeqMap/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/rnaSeqMap/
Package Downloads Report	Download Stats

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