To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("r3Cseq")

In most cases, you don't need to download the package archive at all.

r3Cseq

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see r3Cseq.

Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)

Bioconductor version: 2.12

This package is an implementation of data analysis for the long-range interactions from 3C-seq assay.

Author: Supat Thongjuea, Bergen Center for Computational Science, Norway <supat.thongjuea at bccs.uib.no>

Maintainer: Supat Thongjuea <supat.thongjuea at bccs.uib.no>

Citation (from within R, enter citation("r3Cseq")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("r3Cseq")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("r3Cseq")

biocViews	HighThroughputSequencing, Preprocessing, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	GPL-3
Depends	GenomicRanges, Rsamtools, data.table, rtracklayer, VGAM, qvalue, RColorBrewer, sqldf, methods
Imports
LinkingTo
Suggests	BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL	http://r3cseq.genereg.net
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	r3Cseq_1.6.0.tar.gz
Windows Binary	r3Cseq_1.6.0.zip
Mac OS X 10.6 (Snow Leopard)	r3Cseq_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/r3Cseq/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/r3Cseq/
Package Downloads Report	Download Stats

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