To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("piano")

In most cases, you don't need to download the package archive at all.

piano

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see piano.

Platform for integrative analysis of omics data

Bioconductor version: 2.12

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>

Maintainer: Leif Varemo <piano.rpkg at gmail.com>

Citation (from within R, enter citation("piano")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("piano")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("piano")

 

PDF R Script Piano - Platform for Integrative Analysis of Omics data
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, DataRepresentation, DifferentialExpression, Microarray, Preprocessing, QualityControl, Software, Visualization
Version 1.0.7
In Bioconductor since BioC 2.12 (R-3.0) (3 years)
License GPL (>=2)
Depends R (>= 2.14.0)
Imports Biobase, gplots, igraph, relations, marray
LinkingTo
Suggests yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt
SystemRequirements
Enhances
URL http://www.sysbio.se/piano
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source piano_1.0.7.tar.gz
Windows Binary piano_1.0.7.zip
Mac OS X 10.6 (Snow Leopard) piano_1.0.7.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/piano/tree/release-2.12
Package Short Url http://bioconductor.org/packages/piano/
Package Downloads Report Download Stats

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