To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pdInfoBuilder")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see pdInfoBuilder.
Bioconductor version: 2.12
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey, Matt Settles and Kristof de Beuf
Maintainer: Benilton Carvalho <Benilton.Carvalho at cancer.org.uk>
Citation (from within R,
enter citation("pdInfoBuilder")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("pdInfoBuilder")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pdInfoBuilder")
R Script | Building Annotation Packages with pdInfoBuilder for Use with the oligo Package | |
R Script | PDInfo Package Building Affymetrix Mapping Chips | |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, Infrastructure, Software |
Version | 1.24.0 |
In Bioconductor since | BioC 2.0 (R-2.5) (9 years) |
License | Artistic-2.0 |
Depends | R (>= 2.15.0), methods, Biobase(>= 2.17.7), RSQLite (>= 0.11.1), affxparser(>= 1.29.12), oligo(>= 1.21.5) |
Imports | Biostrings(>= 2.25.12), IRanges(>= 1.15.44) |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | maqcExpression4plex |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | pdInfoBuilder_1.24.0.tar.gz |
Windows Binary | pdInfoBuilder_1.24.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | pdInfoBuilder_1.24.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/pdInfoBuilder/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/pdInfoBuilder/ |
Package Downloads Report | Download Stats |
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