To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("manta")

In most cases, you don't need to download the package archive at all.

manta

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see manta.

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: 2.12

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti, David M. Schruth

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Citation (from within R, enter citation("manta")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("manta")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("manta")

biocViews	Bioinformatics, DataImport, DifferentialExpression, GeneExpression, Genetics, HighThroughputSequencing, QualityControl, RNAseq, Software, Visualization
Version	1.6.1
In Bioconductor since	BioC 2.10 (R-2.15) (4 years)
License	Artistic-2.0
Depends	R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports	Hmisc
LinkingTo
Suggests	RSQLite, plotrix
SystemRequirements
Enhances
URL	http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	manta_1.6.1.tar.gz
Windows Binary	manta_1.6.1.zip
Mac OS X 10.6 (Snow Leopard)	manta_1.6.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/manta/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/manta/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: