To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("fdrame")
In most cases, you don't need to download the package archive at all.
fdrame
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see fdrame.
FDR adjustments of Microarray Experiments (FDR-AME)
Bioconductor version: 2.12
This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma
Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli
Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>
Citation (from within R,
enter citation("fdrame")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("fdrame")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fdrame")
| R Script | Annotation Overview | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, MultipleComparisons, Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (10.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | tcltk, graphics, grDevices, stats, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | fdrame_1.32.0.tar.gz |
| Windows Binary | fdrame_1.32.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | fdrame_1.32.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/fdrame/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/fdrame/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
