To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chroGPS")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see chroGPS.
Bioconductor version: 2.12
We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.
Author: Oscar Reina, David Rossell
Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>
Citation (from within R,
enter citation("chroGPS")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("chroGPS")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chroGPS")
R Script | Manual for the chroGPS library | |
Reference Manual | ||
Text | NEWS |
biocViews | Clustering, Software, Visualization |
Version | 1.3.3 |
In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
License | GPL (>=2) |
Depends | R (>= 2.13.0), IRanges, methods, Biobase, MASS, graphics, stats, rgl, changepoint |
Imports | graphics, cluster, DPpackage, ICSNP |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | parallel, XML |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | chroGPS_1.3.3.tar.gz |
Windows Binary | chroGPS_1.3.3.zip |
Mac OS X 10.6 (Snow Leopard) | chroGPS_1.3.3.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/chroGPS/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/chroGPS/ |
Package Downloads Report | Download Stats |
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