To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("bumphunter")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see bumphunter.
Bioconductor version: 2.12
Tools for finding bumps in genomic data
Author: Rafael A. Irizarry, Martin Aryee, Hector Corrada Bravo, Kasper D. Hansen, Harris A. Jaffee
Maintainer: Rafael A. Irizarry <rafa at jhu.edu>
Citation (from within R,
enter citation("bumphunter")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("bumphunter")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bumphunter")
R Script | The bumphunter user's guide | |
Reference Manual |
biocViews | DNAMethylation, Epigenetics, Infrastructure, MultipleComparisons, Software |
Version | 1.0.2 |
In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10), IRanges, GenomicRanges, foreach, iterators, methods, parallel |
Imports | matrixStats, limma, itertools, doRNG |
LinkingTo | |
Suggests | limma, RUnit, BiocGenerics, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | bumphunter_1.0.2.tar.gz |
Windows Binary | bumphunter_1.0.0.zip |
Mac OS X 10.6 (Snow Leopard) | bumphunter_1.0.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/bumphunter/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/bumphunter/ |
Package Downloads Report | Download Stats |
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