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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("adSplit")
In most cases, you don't need to download the package archive at all.
adSplit
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see adSplit.
Annotation-Driven Clustering
Bioconductor version: 2.12
This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.
Author: Claudio Lottaz, Joern Toedling
Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>
Citation (from within R,
enter citation("adSplit")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("adSplit")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("adSplit")
| R Script | Annotation-Driven Clustering | |
| bcb_logo.pdf | ||
| minerva_bcb.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, Clustering, Microarray, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (10 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.1.0), methods (>= 2.1.0) |
| Imports | AnnotationDbi, Biobase(>= 1.5.12), cluster (>= 1.9.1), GO.db(>= 1.8.1), graphics, grDevices, KEGG.db(>= 1.8.1), methods, multtest(>= 1.6.0), stats (>= 2.1.0) |
| LinkingTo | |
| Suggests | golubEsets(>= 1.0), vsn(>= 1.5.0), hu6800.db(>= 1.8.1) |
| SystemRequirements | |
| Enhances | |
| URL | http://compdiag.molgen.mpg.de/software/index.shtml |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | adSplit_1.30.0.tar.gz |
| Windows Binary | adSplit_1.30.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | adSplit_1.30.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/adSplit/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/adSplit/ |
| Package Downloads Report | Download Stats |
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