To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XDE")

In most cases, you don't need to download the package archive at all.

XDE

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see XDE.

XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression

Bioconductor version: 2.12

Multi-level model for cross-study detection of differential gene expression.

Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Citation (from within R, enter citation("XDE")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("XDE")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XDE")

PDF	R Script	XDE Vignette
PDF	R Script	XdeParameterClass Vignette
PDF		Reference Manual
Text		NEWS

biocViews	Bioinformatics, DifferentialExpression, Microarray, Software
Version	2.6.0
In Bioconductor since	BioC 2.2 (R-2.7) (8 years)
License	LGPL-2
Depends	R (>= 2.10.0), Biobase(>= 2.5.5), methods, graphics
Imports	Biobase, BiocGenerics, genefilter, graphics, grDevices, gtools, MergeMaid, methods, stats, utils, mvtnorm
LinkingTo
Suggests	siggenes, genefilter, MASS, RColorBrewer, GeneMeta, RUnit
SystemRequirements
Enhances	coda
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	XDE_2.6.0.tar.gz
Windows Binary	XDE_2.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	XDE_2.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/XDE/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/XDE/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: