To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqArray")

In most cases, you don't need to download the package archive at all.

SeqArray

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see SeqArray.

Big Data Management of Genome-wide Sequencing Variants

Bioconductor version: 2.12

Big data management of genome-wide variants using the CoreArray library, where genotypic data and annotations are stored in an array-oriented manner, offering efficient access of genetic variants using the R language.

Author: Xiuwen Zheng

Maintainer: Xiuwen Zheng <zhengx at u.washington.edu>

Citation (from within R, enter citation("SeqArray")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SeqArray")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqArray")

PDF	R Script	SeqArray: an R/Bioconductor Package for Big Data Management of Genome-Wide Sequencing Variants
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 2.12 (R-3.0) (3 years)
License	GPL-3
Depends	gdsfmt (>= 0.9.12)
Imports
LinkingTo
Suggests	parallel, snow
SystemRequirements
Enhances
URL	http://corearray.sourceforge.net/tutorials/SeqArray/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SeqArray_1.0.0.tar.gz
Windows Binary	SeqArray_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SeqArray_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/SeqArray/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/SeqArray/
Package Downloads Report	Download Stats

Documentation »

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