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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rtreemix")
In most cases, you don't need to download the package archive at all.
Rtreemix
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see Rtreemix.
Rtreemix: Mutagenetic trees mixture models.
Bioconductor version: 2.12
Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.
Author: Jasmina Bogojeska
Maintainer: Jasmina Bogojeska <jasmina at mpi-inf.mpg.de>
Citation (from within R,
enter citation("Rtreemix")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rtreemix")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rtreemix")
| ClassDiagram.pdf | ||
| ExtendedVignette.pdf | ||
| R Script | Rtreemix | |
| topologies.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (8 years) |
| License | LGPL |
| Depends | R (>= 2.5.0), methods, graph, Biobase |
| Imports | methods, graph, Biobase, Hmisc |
| LinkingTo | |
| Suggests | Rgraphviz |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rtreemix_1.22.0.tar.gz |
| Windows Binary | Rtreemix_1.22.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | Rtreemix_1.22.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rtreemix/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/Rtreemix/ |
| Package Downloads Report | Download Stats |
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