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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rsubread")
In most cases, you don't need to download the package archive at all.
Rsubread
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see Rsubread.
Rsubread: an R package for the alignment, summarization and analyses of next-generation sequencing data
Bioconductor version: 2.12
This R package provides facilities for processing the read data generated by the next-gen sequencing technologies. These facilities include quality assessment, read alignment, read summarization, exon-exon junction detection, absolute expression calling and SNP discovery. This package can be used to process both short and long reads. It supports major sequencing platforms such as Illumina GA/HiSeq, Roche 454, ABI SOLiD and Ion Torrent.
Author: Wei Shi and Yang Liao with contributions from Jenny Zhiyin Dai and Timothy Triche, Jr.
Maintainer: Wei Shi <shi at wehi.edu.au>
Citation (from within R,
enter citation("Rsubread")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rsubread")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rsubread")
| R Script | Rsubread Vignette | |
| SubreadUsersGuide.pdf | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | HighThroughputSequencing, Sequencing, Software |
| Version | 1.10.5 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | GPL-3 |
| Depends | |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://bioconductor.org/packages/release/bioc/html/Rsubread.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rsubread_1.10.5.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | Rsubread_1.10.5.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rsubread/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/Rsubread/ |
| Package Downloads Report | Download Stats |
Documentation »
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