To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RSVSim")
In most cases, you don't need to download the package archive at all.
RSVSim
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see RSVSim.
RSVSim: an R/Bioconductor package for the simulation of structural variations
Bioconductor version: 2.12
RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <christoph.bartenhagen at uni-muenster.de>
Citation (from within R,
enter citation("RSVSim")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RSVSim")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RSVSim")
| R Script | RSVSim: an R/Bioconductor package for the simulation of structural variations | |
| Reference Manual |
Details
| biocViews | Bioinformatics, HighThroughputSequencing, HighThroughputSequencingData, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | LGPL-3 |
| Depends | R (>= 3.0.0), Biostrings, GenomicRanges |
| Imports | methods, IRanges, ShortRead |
| LinkingTo | |
| Suggests | BSgenome.Hsapiens.UCSC.hg19, MASS, rtracklayer |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RSVSim_1.0.2.tar.gz |
| Windows Binary | RSVSim_1.0.2.zip |
| Mac OS X 10.6 (Snow Leopard) | RSVSim_1.0.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RSVSim/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/RSVSim/ |
| Package Downloads Report | Download Stats |
Documentation »
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