To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAinteract")

In most cases, you don't need to download the package archive at all.

RNAinteract

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see RNAinteract.

Estimate Pairwise Interactions from multidimensional features

Bioconductor version: 2.12

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Author: Bernd Fischer <bernd.fischer at embl.de>

Maintainer: Bernd Fischer <bernd.fischer at embl.de>

Citation (from within R, enter citation("RNAinteract")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAinteract")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAinteract")

PDF	R Script	RNAinteract
PDF		Reference Manual

Details

biocViews	CellBasedAssays, Preprocessing, QualityControl, Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	Artistic-2.0
Depends	R (>= 2.12.0), abind, locfit, Biobase
Imports	RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	RNAinteractMAPK
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RNAinteract_1.8.0.tar.gz
Windows Binary	RNAinteract_1.8.0.zip
Mac OS X 10.6 (Snow Leopard)	RNAinteract_1.8.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/RNAinteract/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/RNAinteract/
Package Downloads Report	Download Stats

Documentation »

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