To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("QuasR")
In most cases, you don't need to download the package archive at all.
QuasR
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see QuasR.
Quantify and Annotate Short Reads in R
Bioconductor version: 2.12
This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler at fmi.ch>
Citation (from within R,
enter citation("QuasR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("QuasR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("QuasR")
| R Script | An introduction to QuasR | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ChIPseq, Genetics, HighThroughputSequencing, Methylseq, Preprocessing, RNAseq, Software |
| Version | 1.0.9 |
| In Bioconductor since | BioC 2.12 (R-3.0) (3 years) |
| License | GPL-2 |
| Depends | R (>= 2.15.0), parallel, GenomicRanges, Rbowtie(>= 0.99.0) |
| Imports | methods, zlibbioc, BiocGenerics, IRanges, BiocInstaller, Biobase, Biostrings, GenomicRanges, BSgenome, Rsamtools, GenomicFeatures, ShortRead |
| LinkingTo | Rsamtools |
| Suggests | Rsamtools, rtracklayer, Gviz, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | QuasR_1.0.9.tar.gz |
| Windows Binary | QuasR_1.0.9.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | QuasR_1.0.9.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/QuasR/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/QuasR/ |
| Package Downloads Report | Download Stats |
Documentation »
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