To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("OrderedList")
In most cases, you don't need to download the package archive at all.
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see OrderedList.
Bioconductor version: 2.12
Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.
Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz
Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>
Citation (from within R,
enter citation("OrderedList")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("OrderedList")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OrderedList")
bcb_logo.pdf | ||
R Script | Similarities of Ordered Gene Lists | |
Reference Manual |
biocViews | DifferentialExpression, Microarray, MultipleComparisons, Software |
Version | 1.32.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (10 years) |
License | GPL (>= 2) |
Depends | R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods |
Imports | Biobase, graphics, methods, stats, twilight |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | http://compdiag.molgen.mpg.de/software/index.shtml |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | OrderedList_1.32.0.tar.gz |
Windows Binary | OrderedList_1.32.0.zip |
Mac OS X 10.6 (Snow Leopard) | OrderedList_1.32.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/OrderedList/tree/release-2.12 |
Package Short Url | http://bioconductor.org/packages/OrderedList/ |
Package Downloads Report | Download Stats |
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