To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

In most cases, you don't need to download the package archive at all.

MiRaGE

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see MiRaGE.

MiRNA Ranking by Gene Expression

Bioconductor version: 2.12

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("MiRaGE")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MiRaGE")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiRaGE")

PDF	R Script	How to use MiRaGE Package
PDF		Reference Manual

biocViews	GeneExpression, HighThroughputSequencingData, Microarray, RNAseq, RNAseqData, SAGE, Sequencing, Software
Version	1.2.0
In Bioconductor since	BioC 2.11 (R-2.15) (3.5 years)
License	GPL
Depends	R (>= 2.12.1), Biobase(>= 2.16.0)
Imports	AnnotationDbi, BiocGenerics
LinkingTo
Suggests	seqinr (>= 3.0.3), biomaRt(>= 2.6.0), GenomicFeatures(>= 1.8.1), Biostrings(>= 2.24.1), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	MiRaGE_1.2.0.tar.gz
Windows Binary	MiRaGE_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)	MiRaGE_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/MiRaGE/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/MiRaGE/
Package Downloads Report	Download Stats

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