GenomeGraphs

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see GenomeGraphs.

Plotting genomic information from Ensembl

Bioconductor version: 2.12

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data. Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Author: Steffen Durinck <sdurinck at gmail.com>, James Bullard <bullard at berkeley.edu>

Maintainer: Steffen Durinck <sdurinck at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomeGraphs")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomeGraphs")

Details

Package Archives

Follow Installation instructions to use this package in your R session.