To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DTA")
In most cases, you don't need to download the package archive at all.
DTA
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see DTA.
Dynamic Transcriptome Analysis
Bioconductor version: 2.12
Dynamic Transcriptome Analysis (DTA) can monitor the cellular response to perturbations with higher sensitivity and temporal resolution than standard transcriptomics. The package implements the underlying kinetic modeling approach capable of the precise determination of synthesis- and decay rates from individual microarray or RNAseq measurements.
Author: Bjoern Schwalb, Benedikt Zacher, Sebastian Duemcke, Achim Tresch
Maintainer: Bjoern Schwalb <schwalb at lmb.uni-muenchen.de>
Citation (from within R,
enter citation("DTA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DTA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DTA")
| R Script | A guide to Dynamic Transcriptome Analysis (DTA) | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Software, Transcription |
| Version | 2.6.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), LSD |
| Imports | scatterplot3d |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DTA_2.6.0.tar.gz |
| Windows Binary | DTA_2.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | DTA_2.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DTA/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/DTA/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
