To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CRImage")

In most cases, you don't need to download the package archive at all.

CRImage

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see CRImage.

CRImage a package to classify cells and calculate tumour cellularity

Bioconductor version: 2.12

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Author: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>, Oscar Rueda <oscar.rueda at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Henrik Failmezger <failmezger at mpipz.mpg.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>

Citation (from within R, enter citation("CRImage")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CRImage")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CRImage")

PDF		cellularity2.pdf
PDF	R Script	CRImage Manual
PDF		labeledImage.pdf
PDF		segmentedImage.pdf
PDF		segmentedImageRaw.pdf
PDF		Reference Manual

Details

biocViews	CellBiology, Classification, Software
Version	1.8.0
In Bioconductor since	BioC 2.7 (R-2.12) (5.5 years)
License	Artistic-2.0
Depends	EBImage, DNAcopy, aCGH
Imports	MASS, e1071, foreach, sgeostat
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CRImage_1.8.0.tar.gz
Windows Binary	CRImage_1.8.0.zip
Mac OS X 10.6 (Snow Leopard)	CRImage_1.8.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CRImage/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/CRImage/
Package Downloads Report	Download Stats