To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BaseSpaceR")

In most cases, you don't need to download the package archive at all.

BaseSpaceR

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see BaseSpaceR.

R SDK for BaseSpace RESTful API

Bioconductor version: 2.12

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Author: Adrian Alexa

Maintainer: Adrian Alexa <aalexa at illumina.com>

Citation (from within R, enter citation("BaseSpaceR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BaseSpaceR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BaseSpaceR")

 

PDF R Script BaseSpaceR
PDF BaseSpaceR-QscoreApp.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews ConnectTools, DataImport, DataRepresentation, Genetics, HighThroughputSequencing, Infrastructure, Sequencing, Software
Version 1.0.1
In Bioconductor since BioC 2.12 (R-3.0) (3 years)
License Apache License 2.0
Depends R (>= 2.15.0), methods, RCurl, RJSONIO
Imports methods
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BaseSpaceR_1.0.1.tar.gz
Windows Binary BaseSpaceR_1.0.1.zip
Mac OS X 10.6 (Snow Leopard) BaseSpaceR_1.0.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BaseSpaceR/tree/release-2.12
Package Short Url http://bioconductor.org/packages/BaseSpaceR/
Package Downloads Report Download Stats

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