To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ArrayExpressHTS")

In most cases, you don't need to download the package archive at all.

ArrayExpressHTS

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see ArrayExpressHTS.

ArrayExpress High Throughput Sequencing Processing Pipeline

Bioconductor version: 2.12

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Author: Angela Goncalves, Andrew Tikhonov

Maintainer: Angela Goncalves <filimon at ebi.ac.uk>, Andrew Tikhonov <andrew at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpressHTS")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ArrayExpressHTS")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpressHTS")

PDF	R Script	ArrayExpressHTS: RNA-Seq Pipeline for transcription profiling experiments
PDF		Reference Manual
Text		NEWS

biocViews	HighThroughputSequencing, RNAseq, Sequencing, Software
Version	1.10.0
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	Artistic License 2.0
Depends	sampling, Rsamtools(>= 1.3.32), snow
Imports	Biobase, Biostrings, DESeq, GenomicRanges, Hmisc, IRanges, R2HTML, RColorBrewer, Rsamtools, ShortRead, XML, biomaRt, edgeR, grDevices, graphics, methods, rJava, stats, svMisc, utils, sendmailR, bitops
LinkingTo	Rsamtools
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	ArrayExpressHTS_1.10.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)	ArrayExpressHTS_1.10.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ArrayExpressHTS/tree/release-2.12
Package Short Url	http://bioconductor.org/packages/ArrayExpressHTS/
Package Downloads Report	Download Stats

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