\name{ceu1kg-package}
\alias{ceu1kg-package}
\alias{ceu1kg}
\alias{ex}
\docType{package}
\title{
CEU (N=60) genotypes from 1000 genomes pilot phase I
}
\description{
CEU genotypes from 1000 genomes pilot phase I (approx
8 million SNP); includes wellcome trust GENEVAR expression
for 41 individuals
}
\details{
\tabular{ll}{
Package: \tab ceu1kg\cr
Version: \tab 0.0.10\cr
Depends: \tab R (>= 2.11.1), GGBase (>= 3.9.0)\cr
License: \tab Artistic-2.0\cr
LazyLoad: \tab yes\cr
Built: \tab R 2.12.0; ; 2010-07-01 01:14:27 UTC; unix\cr
}

Index:
\preformatted{
ceu1kg-package          60 hapmap CEU samples, 47K expression, 8mm 1000
                        genomes SNP 
}
There are three two data resources provided here.  

First, the 1000 genomes
SNP calls for 60 CEU individuals were extracted from the pilot data VCF file
\url{ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/pilot_data/release/2010_07/low_coverage/snps/CEU.low_coverage.2010_07.genotypes.vcf.gz}.

Second, a \code{\link[GGBase]{smlSet-class}} is provided for 43 individuals in the
1000 genomes CEU SNP call set for whom expression data are available via
the Sanger GENEVAR distribution (\url{ftp://ftp.sanger.ac.uk/pub/genevar/CEU_parents_norm_march2007.zip}).
}
\author{
The R package was created by VJ Carey <stvjc@channing.harvard.edu>

Maintainer: VJ Carey <stvjc@channing.harvard.edu>
}
%\references{
%~~ Literature or other references for background information ~~
%}
%~~ Optionally other standard keywords, one per line, from file KEYWORDS in ~~
%~~ the R documentation directory ~~
\keyword{ package }
%\seealso{
%~~ Optional links to other man pages, e.g. ~~
%%~~ \code{\link[<pkg>:<pkg>-package]{<pkg>}} ~~
%}
\examples{
library(ceu1kg)
}