\name{makeGeneScaffold}
\alias{makeGeneScaffold}
\title{Building a GRange object at chromosome level on UCSC genome data}
\description{A function to build a gene level scaffold to associate reads derived from bowtie mapping.
      The function is embedded in bowtieGenome function that build, at chromosome level, the reference 
      genome for primary mapping.
      Built scaffolds are available as precompiled at sourceforge oneChannelGUI.extras project.             
}
\usage{makeGeneScaffold(whichRef)}
\arguments{
\item{whichRef}{The genome of interest to be used to create a gene-level scaffold}
}
\author{Raffaele A Calogero}
\seealso{makeGCcontent, wrapScaffold}
\keyword{utilities}