\name{OpenmRNABam}
\alias{OpenmRNABam}
\title{This function loads Bam files generated by local mapping with bowte in oneChannelGUI}
\description{
 The function creates and expressionSet starting from the association of reads mapped by Bowtie using
 chromosome oriented mapping controlled by oneChannelGUI and associate those mapping to gene-level
 regions extracted by UCSC browser.
 IMPORTANT at the present time the expression set is base on gene-level data and not on exon-level data.
}
\usage{OpenmRNABam()}
\author{Raffaele A Calogero}
\keyword{utilities}