\name{c5.go.mapping} \alias{c5.go.mapping} \docType{data} \title{MSigDB C5 GO term to GO ID mapping} \description{ This object provides a mapping for MSigDB GO terms for the bp, mf and cc GO categories to official GO ID's. } \format{ A data frame with 1454 observations on the following 2 variables. \describe{ \item{\code{description}}{a character vector of MSigDB GO terms} \item{\code{goid}}{a character vector of official GO ID's} } } \source{ \bold{c5.go.mapping:} \url{http://www.broadinstitute.org/gsea/msigdb/collections.jsp#C5} } \references{ Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. \emph{Proceedings of the National Academy of Sciences of the United States of America} 2005 Oct;\bold{102}(43):15545 -15550.} \examples{ ## load the mapping data(c5.go.mapping) ## look at the object str(c5.go.mapping) ## create go term vector terms <- c("CHROMATIN_REMODELING_COMPLEX", "RNA_POLYMERASE_COMPLEX", "CYTOKINESIS","CELL_RECOGNITION") id <- sapply(terms,function(x)c5.go.mapping[ match(x,c5.go.mapping[,1]),2]) id } \keyword{datasets}