\name{TrioSet}
\alias{TrioSet}

\title{
  Constructor for TrioSet objects.
}
\description{
  Construct an object of class \code{TrioSet}.
}
\usage{
TrioSet(pedigreeData = Pedigree(), sample.sheet, row.names = NULL, lrr,
  baf, featureData, cdfname, drop = TRUE, mindist=NULL)
}
%- maybe also 'usage' for other objects documented here.
\arguments{

  \item{pedigreeData}{
    A \code{Pedigree}  object.
}
  \item{sample.sheet}{
    A \code{data.frame} of sample covariates.
}
\item{row.names}{

  Row identifiers for \code{sample.sheet} that match the names of the
  trios in the \code{Pedigree} object.

}
  \item{lrr}{
    Matrix of log R ratios
  }

  \item{baf}{
    Matrix of B allele frequencies
  }

  \item{featureData}{
    \code{AnnotatedDataFrame} for features.
  }

  \item{cdfname}{
    \code{character} string for annotation package.
  }

  \item{drop}{
    \code{Logical}. If FALSE, the row and column \code{dimnames} are null.
  }

  \item{mindist}{
    A \code{matrix} of the minimum distance.
  }
}

\value{
  A object of class \code{\linkS4class{TrioSet}}.
}

\author{
R. Scharpf
}

\seealso{
  \code{\linkS4class{TrioSet}}, \code{\linkS4class{Pedigree}}, \code{\link{Pedigree}}
}
\examples{
	path <- system.file("extdata", package="MinimumDistance")
	load(file.path(path, "logRratio.rda"))
	load(file.path(path, "baf.rda"))
	load(file.path(path, "pedigreeInfo.rda"))
	trioSet <- TrioSet(lrr=logRratio,
			   baf=baf,
			   pedigree=Pedigree(pedigreeInfo),
			   cdfname="human610quadv1bCrlmm")
}
\keyword{manip}