%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % Do not modify this file since it was automatically generated from: % % idMapDiffCounts.R % % by the Rdoc compiler part of the R.oo package. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% \name{summary.IdMapDiffCounts} \alias{summary.IdMapDiffCounts} \alias{IdMapDiffCounts.summary} \alias{summary.IdMapDiffCounts} \alias{summary,IdMapDiffCounts-method} \title{Get a compaund event counts summary report} \description{ Get a counts summary report where each row is a count of matches corresponding to a particular compound event } \usage{\method{summary}{IdMapDiffCounts}(object, ...)} \arguments{ \item{...}{Not used} } \value{ A \code{\link[base]{data.frame}} with a single 'counts' column where each row is a count of matches corresponding to a particular compound event. } \examples{ #create IdMapDiffCounts object IDs<-IdMapBase$primaryIDs(examples$msmsExperimentSet); jointIdMap<-JointIdMap(examples$identDfList,primaryIDs=IDs); diffs<-jointIdMap$getDiff("NetAffx_F","DAVID_Q",verbose=TRUE); diffCounts<-IdMapDiffCounts(diffs); # get summary diffCounts$summary(); } \seealso{For more information see \code{\link{IdMapDiffCounts}}.} \author{Alex Lisovich, Roger Day} \keyword{internal} \keyword{methods}