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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")
In most cases, you don't need to download the package archive at all.
Rgraphviz
|
This package is for version 2.11 of Bioconductor; for the stable, up-to-date release version, see Rgraphviz.
Provides plotting capabilities for R graph objects
Bioconductor version: 2.11
Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package. Users on all platforms must install graphviz; see the README file, available in the source distribution of this file, for details.
Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>
Citation (from within R,
enter citation("Rgraphviz")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rgraphviz")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rgraphviz")
| R Script | A New Interface to Plot Graphs Using Rgraphviz | |
| R Script | How To Plot A Graph Using Rgraphviz | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GraphsAndNetworks, NetworkVisualization, Software |
| Version | 2.2.1 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | file LICENSE |
| Depends | R (>= 2.6.0), methods, utils, graph, grid |
| Imports | stats4, graph, graphics, grDevices, grid, methods, utils |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, XML |
| SystemRequirements | Graphviz (>= 2.16) |
| Enhances | |
| URL | |
| Depends On Me | biocGraph, BioMVCClass, flowMerge, GOFunction, hyperdraw, nem, netresponse, pathRender, TDARACNE |
| Imports Me | apComplex, biocGraph, DEGraph, GeneAnswers, GOFunction, nem, RchyOptimyx |
| Suggests Me | altcdfenvs, annotate, BiocCaseStudies, Category, CellNOptR, CNORfuzzy, ddgraph, DEGraph, flowCore, flowMerge, flowWorkspace, GeneNetworkBuilder, geneplotter, GlobalAncova, globaltest, GOstats, GSEABase, KEGGgraph, MLP, NCIgraph, NCIgraphData, oneChannelGUI, pcaGoPromoter, pkgDepTools, RBGL, RBioinf, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, Streamer, topGO |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rgraphviz_2.2.1.tar.gz |
| Windows Binary | Rgraphviz_2.2.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rgraphviz/tree/release-2.11 |
| Package Short Url | http://bioconductor.org/packages/Rgraphviz/ |
| Package Downloads Report | Download Stats |
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