\name{tweeDEseqCountData-package}
\alias{tweeDEseqCountData-package}
\docType{data}
\title{RNA-seq count data employed in the vignette of the tweeDEseq package
}
\description{
RNA-seq tables of counts employed in the vignette of the \code{tweeDEseq} package
(Esnaola et al., submitted). These three data sets were downloaded from the
ReCount repository at \url{http://bowtie-bio.sourceforge.net/recount} and contain
tables of counts from RNA-seq experiments by Cheung et al. (2010), Montgomery et
al. (2010) and Pickrell et al. (2010). The raw RNA-seq data was pre-processed
according to the procedures described by Frazee et al. (2011). Please check the
individual help pages of each data set for further details.
}

%\format{
%}
%\details{
  
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\source{
V.G. Cheung, R.R. Nayak, I.X. Wang, S. Elwyn, S.M. Cousins, M. Morley
and R.S. Spielman. \emph{Plos Biology}, 8(9), pii:e1000480, 2010.

A.C. Frazee, B. Langmead and J.T. Leek. ReCount: a multi-experiment
resource of analysis-ready RNA-seq gene count datasets.
\emph{BMC Bioinformatics}, 12:449, 2011.

S.B. Montgomery, M. Sammeth, M. Gutierrez-Arcelus, R.P. Lach, C. Ingle,
J. Nisbett, R. Guigo and E.T. Dermitzakis. Transcriptome genetics using
second generation sequencing in a Caucasian population.
\emph{Nature}, 464:773-777, 2010.

J.K. Pickrell, J.C. Marioni, A.A Pai, J.F. Degner, B.E. Engelhardt,
E. Nkadori, J.B Veyrieras, M. Stephens, Y. Gilad, and J.K. Pritchard.
\emph{Nature}, 464:768-772, 2010.
}

\references{
  M. Esnaola, P. Puig, D. Gonzalez, R. Castelo, J.R. Gonzalez.
  Gene-specific count data distributions are required in RNA-seq
  experiments with extensive replication, \emph{submitted}.
}
\seealso{
  \code{\link{annotEnsembl63}}    
  \code{\link{cheung}}    
  \code{\link{montgomery}}    
  \code{\link{pickrell}}    
  \code{\link{genderGenes}}
  \code{\link{hkGenes}}
 }
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\keyword{datasets}