\name{ggtut-package}
\alias{ggtut-package}
\alias{ggtut}
\alias{hg18tx}
\alias{CPS17}
\alias{PERMCPS17}
\alias{SVA1}
\alias{bestGenesPerSNP_obs}
\alias{bestGenesPerSNP_perm}
\alias{permsb1}
\alias{rsb2_list}
\alias{rsb2_perm_list}
\alias{sb1}
\alias{getFixedBFL}
\docType{package}
\title{
support for tutorial on genetics of gene expression ISMB 2011
}
\description{
various resources for genetics of expression with R/bioc
}
\details{
\tabular{ll}{
Package: \tab ggtut\cr
Version: \tab 0.0.11\cr
Suggests: \tab rtracklayer\cr
Depends: \tab R (>= 2.14.0), GGtools, ff, GenomicRanges\cr
License: \tab Artistic-2.0\cr
LazyLoad: \tab yes\cr
Built: \tab R 2.14.0; ; 2011-05-19 17:26:27 UTC; unix\cr

CPS17 is a cisProxScores instance, as is PERMCPS17, serialized to
reduce vignette computation time.  SVA1 is an sva() output.
}

Index:
\preformatted{
observed17ceu           obtain access to ff-based archives of eQTL test
                        results
hg18tx			a function that returns a reference to a transcriptDb
			instance for hg18
getFixedBFL		retrieve a BamFileList of 41 small RNA seq extracts
			with nicely formatted HapMap names
}


Further information is available in the following vignettes:
\tabular{ll}{
\code{tut11} \tab  (source, pdf)\cr
}


}
\author{
VJ Carey <stvjc@channing.harvard.edu>

Maintainer: VJ Carey <stvjc@channing.harvard.edu>

}
%\references{
%
%}
\keyword{ package }
%\seealso{
%~~ Optional links to other man pages, e.g. ~~
%~~ \code{\link[<pkg>:<pkg>-package]{<pkg>}} ~~
%}
\examples{
library(ggtut)
o17 = observed17ceu()
o17
ch41 = getFixedBFL()
ch41
}