\name{cheung2010-package}
\alias{cheung2010-package}
\alias{cheung2010}
\alias{ex}
\alias{cheung_eset}
\alias{cheung_eset_notrunc}
\docType{package}
\title{
resources for genetics of gene expression based on Cheung et al 2010
~~ package title ~~
}
\description{
Data resources related to the PLoS Biology paper Polymorphic
Cis- and Trans-Regulation of Human Gene
Expression, including small-footprint smlSet support for 147 hgfocus
arrays and corresponding HapMap genotypes at 1.3 million SNP
~~ A concise (1-5 lines) description of the package ~~
}
\details{
\tabular{ll}{
Package: \tab cheung2010\cr
Version: \tab 0.0.16\cr
Depends: \tab R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db\cr
Imports: \tab AnnotationDbi\cr
Suggests: \tab SNPlocs.Hsapiens.dbSNP.20101109\cr
License: \tab private\cr
LazyLoad: \tab yes\cr
Packaged: \tab 2011-04-13 16:52:30 UTC; stvjc\cr
Built: \tab R 2.14.0; ; 2011-06-13 16:19:18 UTC; unix\cr
}

Index:
\preformatted{
cheung2010locs          cheung2010locs gives locations for HapMap phase
                        3 SNPs for CEPH CEU
cheung_eset		from RECOUNT web resource for RNA-seq http://bowtie-bio.sourceforge.net/recount/
cheung_eset_notrunc	from RECOUNT web resource for RNA-seq
}

Further information is available in the following vignettes:
\tabular{ll}{
\code{cheungTrans} \tab  (source, pdf)\cr
}

This package assembles data relevant to Cheung et al PLoS Biology (2010; 8(9)).
}
\author{
Vince Carey <stvjc@channing.harvard.edu>

Maintainer: Vince Carey <stvjc@channing.harvard.edu>
%~~ The author and/or maintainer of the package ~~
}
\references{
%~~ Literature or other references for background information ~~
}
%~~ Optionally other standard keywords, one per line, from file KEYWORDS in ~~
%~~ the R documentation directory ~~
\keyword{ package }
\seealso{
%~~ Optional links to other man pages, e.g. ~~
%~~ \code{\link[<pkg>:<pkg>-package]{<pkg>}} ~~
}
\examples{
%~~ simple examples of the most important functions ~~
}