Changes in version 1.1: o Same fixes as in 1.0.1 o Resaved the data files, so they take up less space. o Added edgeR as a Suggests: since the vignette uses it. Changes in version 1.0.1: o The function alpha has been moved from ggplot2 to the new package scales. Vignette and Suggests: fields have been changed accordingly. o sizeFactors = NULL should now work for cqn and cq.fixedlength. Thanks to Maria Chikina for reporting this Changes in version 0.99: o Version bump as well as added to Bioconductor devel branch. o Wrote vignette. o Added additional manpages as well as examples. o Added data from Montgomery et al. o Added NAMESPACE file. o Added manpage for cqn. o Renamed cqn, cqn2. o Added NEWS.Rd file. o Added vignette skeleton. o Added CITATION file.