\name{space} \alias{[} \alias{[<-} \alias{[<-,GenoSet,ANY,ANY,ANY-method} \alias{elementLengths} \alias{end} \alias{names} \alias{ranges} \alias{space} \alias{start} \alias{width} \title{Get space factor for GenoSet} \arguments{ \item{x}{GenoSet} \item{x}{GenoSet} \item{x}{GenoSet} \item{x}{GenoSet} \item{x}{GenoSet} \item{x}{GenoSet} \item{x}{GenoSet} \item{x}{GenoSet} \item{i}{character, RangedData, RangesList, logical, integer} \item{j}{character, RangedData, RangesList, logical, integer} \item{k}{character or integer} \item{drop}{logical drop levels of space factor?} \item{...}{additional subsetting args} } \value{ factor integer integer integer character character character } \description{ locData slot holds a RangedData, which keeps the chromosome of each feature in a factor names 'space'. locData slot holds a RangedData. locData slot holds a RangedData. locData slot holds a RangedData. Get chromosome names Get ranges from locData slot Get elementLengths from locData slot } \details{ Get chromosome names, which are the names of the locData slot. Get ranges from locData slot Get elementLengths from locData slot } \examples{ data(genoset) space(genoset.ds) start(genoset.ds) end(genoset.ds) chrNames(genoset.ds) ranges(genoset.ds) # Returns a RangesList elementLengths(genoset.ds) # Returns the number of probes per chromosome data(genoset) genoset.ds[1:5,2:3] # first five probes and samples 2 and 3 genoset.ds[ , "K"] # Sample called K rd = RangedData(ranges=IRanges(start=seq(from=15e6,by=1e6,length=7),width=1),names=letters[8:14],space=rep("chr17",7)) genoset.ds[ rd, "K" ] # sample K and probes overlapping those in rd, which overlap specifed ranges on chr17 } \author{ Peter M. Haverty Peter M. Haverty Peter M. Haverty Peter M. Haverty Peter Haverty Peter Haverty Peter Haverty }